PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_9071B96BD.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 591aa    MW: 67509.7 Da    PI: 7.8052
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_9071B96BD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.35.4e-2341133191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                            +fY++YA+++GFsvr+ + k   +n+ + +++f+Cs+eg+r+++       +++r+ r++tr+gC+a++ vk+ +d+k+++t+  ++H
  Traes_2DL_9071B96BD.1  41 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSDKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHH 127
                            6****************97766.8999***************99877777889999******************************** PP

                   FAR1  86 nHelap 91 
                            nH ++p
  Traes_2DL_9071B96BD.1 128 NHGFVP 133
                            **9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-2041133IPR004330FAR1 DNA binding domain
PfamPF105511.7E-22253343IPR018289MULE transposase domain
PROSITE profilePS509669.52522571IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-4546573IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MHHGTYCSGF LMLQSSLAPE CDEALKPSVG MVFEDIGSVE EFYKSYAHHC GFSVRVGQRK  60
LLNNEVVQWK RFMCSREGFR SDKCMGVDDP SRKRKVRKVT RCGCDARIIV KRCTDNKYKI  120
TSWIEHHNHG FVPPDKCHLI RSNRQLSDKV KPTVSTHCKA SSGTSQANKP DHVSEGRSDN  180
VGCTKRDLQK YHHDLCSKIK NEDAQIFVAQ LCRKQQEDSA FFFDCDVDDQ GMLVHVFWAD  240
ATSRKNYIYF GDILTFDSTN TMNQHGMIFA PFTGTNHHLQ SVLFGAAFLA DEKIESYAWL  300
FQTFLRAMGG VSPKTIVTRE NDRMKAAISN VLPATSHRLC MLEMLERMPE KVEPSLRNNP  360
LFQTRMNECV LGSETVFEFE SKWESIISDF GLQGNQWLAE RYSTRERWIL AYSRDTHLSG  420
IIRSTAWSKS AKSFFNCFIN QKLSLAEFWL RFESALECQR QEESNADHTS AYATPQLITP  480
WGLEKHGSVV FTHEVFERFQ EEIVAARDHC VVEDMAQTEG VKTVAIGGDD SDKVREVRWD  540
AVTMTANCSC KLFESVGISC RHINLVLRSS KLNELPSSCV LKRWQKSAKF G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467387.10.0hypothetical protein SORBIDRAFT_01g026910
TrEMBLW5BXH30.0W5BXH3_WHEAT; Uncharacterized protein
STRINGMLOC_19788.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]